IL_7LH5_327

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

7LH5|1|BA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_327 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.2632

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7LH5|1|BA|C|844
7LH5|1|BA|G|845
7LH5|1|BA|C|846
7LH5|1|BA|U|847
7LH5|1|BA|G|848
7LH5|1|BA|A|849
7LH5|1|BA|C|850
*
7LH5|1|BA|G|927
7LH5|1|BA|G|928
7LH5|1|BA|U|930
7LH5|1|BA|G|931
7LH5|1|BA|G|932
7LH5|1|BA|A|933
7LH5|1|BA|G|934

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L30