IL_7LH5_330

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GGUG*CACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_330 not in the Motif Atlas

Geometric match to IL_4XW0_002

Geometric discrepancy: 0.3166

The information below is about IL_4XW0_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7LH5|1|BA|G|1627
7LH5|1|BA|G|1628
7LH5|1|BA|U|1629
7LH5|1|BA|G|1630
*
7LH5|1|BA|C|1636
7LH5|1|BA|A|1637
7LH5|1|BA|C|1638
7LH5|1|BA|U|1639

Current chains

Chain BA

23S ribosomal RNA

Nearby chains