IL_7LH5_334

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

7LH5|1|BA|G|2655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LH5_334 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.3454

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7LH5|1|BA|C|2652
7LH5|1|BA|U|2653
7LH5|1|BA|A|2654
7LH5|1|BA|G|2655
7LH5|1|BA|U|2656
7LH5|1|BA|A|2657
7LH5|1|BA|C|2658
*
7LH5|1|BA|G|2663
7LH5|1|BA|G|2664
7LH5|1|BA|A|2665
7LH5|1|BA|C|2666
7LH5|1|BA|C|2667
7LH5|1|BA|G|2668

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L6