IL_7LS1_001

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

7LS1|1|C2|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_001 not in the Motif Atlas

Homologous match to IL_8C3A_002

Geometric discrepancy: 0.5493

The information below is about IL_8C3A_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7LS1|1|A2|C|6
7LS1|1|A2|C|7
*
7LS1|1|C2|G|149
7LS1|1|C2|C|150
7LS1|1|C2|G|151

Current chains

Chain A2

28S rRNA

Chain C2

5.8S rRNA

Nearby chains

Chain B1

60S ribosomal protein L7a

Chain H1

60S ribosomal protein L15

Chain R2

60S ribosomal protein L23a