IL_7LS1_011

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCGUGG*CGG

Length

10 nucleotides

Bulged bases

7LS1|1|A2|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_011 not in the Motif Atlas

Geometric match to IL_8P9A_395

Geometric discrepancy: 0.3987

The information below is about IL_8P9A_395

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

7LS1|1|A2|C|183
7LS1|1|A2|U|184
7LS1|1|A2|C|185
7LS1|1|A2|G|186
7LS1|1|A2|U|187
7LS1|1|A2|G|188
7LS1|1|A2|G|189
*
7LS1|1|A2|C|252
7LS1|1|A2|G|253
7LS1|1|A2|G|254

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F1

60S ribosomal protein L13

Chain b2

60S ribosomal protein L35

Chain d2

60S ribosomal protein L37