IL_7LS1_019
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGAAAC*G(OMU)GGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_019 not in the Motif Atlas
- Geometric match to IL_4V9F_001
- Geometric discrepancy: 0.3225
- The information below is about IL_4V9F_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.3
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
7LS1|1|A2|G|415
7LS1|1|A2|U|416
7LS1|1|A2|G|417
7LS1|1|A2|A|418
7LS1|1|A2|A|419
7LS1|1|A2|A|420
7LS1|1|A2|C|421
*
7LS1|1|C2|G|13
7LS1|1|C2|OMU|14
7LS1|1|C2|G|15
7LS1|1|C2|G|16
7LS1|1|C2|A|17
7LS1|1|C2|U|18
7LS1|1|C2|C|19
Current chains
- Chain A2
- 28S rRNA
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain F2
- 60S ribosomal protein L4
- Chain J2
- 60S ribosomal protein L17
- Chain Y2
- 60S ribosomal protein L32
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