IL_7LS1_020

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

7LS1|1|A2|C|1115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_020 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.2805

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7LS1|1|A2|G|443
7LS1|1|A2|G|444
7LS1|1|A2|U|445
7LS1|1|A2|C|446
*
7LS1|1|A2|G|1114
7LS1|1|A2|C|1115
7LS1|1|A2|U|1116
7LS1|1|A2|A|1117
7LS1|1|A2|C|1118

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain Y2

60S ribosomal protein L32

Chain Z2

60S ribosomal protein L35a