IL_7LS1_057

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_057 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1522

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

7LS1|1|A2|C|1244
7LS1|1|A2|G|1245
7LS1|1|A2|A|1246
7LS1|1|A2|G|1247
*
7LS1|1|A2|C|1263
7LS1|1|A2|G|1264
7LS1|1|A2|A|1265
7LS1|1|A2|G|1266

Current chains

Chain A2

28S rRNA

Nearby chains

Chain K2

60S ribosomal protein L18

Chain V2

60S ribosomal protein L29