IL_7LS1_064

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAG*UG(B9B)AG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B9B

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_064 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1712

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7LS1|1|A2|C|1364
7LS1|1|A2|G|1365
7LS1|1|A2|A|1366
7LS1|1|A2|A|1367
7LS1|1|A2|G|1368
*
7LS1|1|A2|U|1385
7LS1|1|A2|G|1386
7LS1|1|A2|B9B|1387
7LS1|1|A2|A|1388
7LS1|1|A2|G|1389

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L8

Chain L2

60S ribosomal protein L19

Chain j2

60S ribosomal protein L37a