IL_7LS1_086

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUG(OMG)CGC

Length

28 nucleotides

Bulged bases

7LS1|1|A2|C|1737, 7LS1|1|A2|A|1843, 7LS1|1|A2|G|1851

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_086 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.1974

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7LS1|1|A2|G|1735
7LS1|1|A2|A|1736
7LS1|1|A2|C|1737
7LS1|1|A2|C|1738
7LS1|1|A2|C|1739
7LS1|1|A2|C|1740
7LS1|1|A2|A|1741
7LS1|1|A2|G|1742
7LS1|1|A2|A|1743
7LS1|1|A2|A|1744
7LS1|1|A2|A|1745
7LS1|1|A2|A|1746
*
7LS1|1|A2|U|1840
7LS1|1|A2|G|1841
7LS1|1|A2|A|1842
7LS1|1|A2|A|1843
7LS1|1|A2|A|1844
7LS1|1|A2|A|1845
7LS1|1|A2|U|1846
7LS1|1|A2|G|1847
7LS1|1|A2|G|1848
7LS1|1|A2|A|1849
7LS1|1|A2|U|1850
7LS1|1|A2|G|1851
7LS1|1|A2|OMG|1852
7LS1|1|A2|C|1853
7LS1|1|A2|G|1854
7LS1|1|A2|C|1855

Current chains

Chain A2

28S rRNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain D1

60S ribosomal protein L10-like

Chain E2

60S ribosomal protein L3

Chain I2

60S ribosomal protein L13a

Chain Z2

60S ribosomal protein L35a

Chain g2

Ubiquitin-60S ribosomal protein L40