IL_7LS1_090

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_090 not in the Motif Atlas

Geometric match to IL_6F4H_001

Geometric discrepancy: 0.3559

The information below is about IL_6F4H_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

7LS1|1|A2|G|1805
7LS1|1|A2|U|1806
7LS1|1|A2|G|1807
*
7LS1|1|A2|C|1816
7LS1|1|A2|U|1817
7LS1|1|A2|C|1818

Current chains

Chain A2

28S rRNA

Nearby chains

Chain g2

Ubiquitin-60S ribosomal protein L40

Chain j

60S acidic ribosomal protein P0