IL_7LS1_093

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

7LS1|1|A2|G|2098

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_093 not in the Motif Atlas

Homologous match to IL_8C3A_061

Geometric discrepancy: 0.0843

The information below is about IL_8C3A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

7LS1|1|A2|C|2045
7LS1|1|A2|G|2046
7LS1|1|A2|C|2047
*
7LS1|1|A2|G|2097
7LS1|1|A2|G|2098
7LS1|1|A2|U|2099
7LS1|1|A2|G|2100

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain F2

60S ribosomal protein L4

Chain U2

60S ribosomal protein L27a

Chain Y2

60S ribosomal protein L32

Chain k2

60S ribosomal protein L28