IL_7LS1_151

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCA(1MA)G*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_151 not in the Motif Atlas

Homologous match to IL_5TBW_106

Geometric discrepancy: 0.1763

The information below is about IL_5TBW_106

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7LS1|1|A2|C|4064
7LS1|1|A2|C|4065
7LS1|1|A2|A|4066
7LS1|1|A2|1MA|4067
7LS1|1|A2|G|4068
*
7LS1|1|A2|C|4078
7LS1|1|A2|G|4079
7LS1|1|A2|A|4080
7LS1|1|A2|C|4081
7LS1|1|A2|G|4082

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D1

60S ribosomal protein L10-like

Chain g2

Ubiquitin-60S ribosomal protein L40