IL_7LS1_153

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7LS1|1|A2|G|4174, 7LS1|1|A2|A|4175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_153 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0978

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7LS1|1|A2|C|4108
7LS1|1|A2|U|4109
7LS1|1|A2|C|4110
*
7LS1|1|A2|G|4172
7LS1|1|A2|U|4173
7LS1|1|A2|G|4174
7LS1|1|A2|A|4175
7LS1|1|A2|G|4176

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain P2

60S ribosomal protein L23