IL_7LS1_154

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

7LS1|1|A2|A|4170, 7LS1|1|A2|C|4171

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_154 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.1398

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.4

Basepair signature

cWW-cWW

Number of instances in this motif group

22

Unit IDs

7LS1|1|A2|C|4110
7LS1|1|A2|U|4111
*
7LS1|1|A2|A|4169
7LS1|1|A2|A|4170
7LS1|1|A2|C|4171
7LS1|1|A2|G|4172

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

60S ribosomal protein L3

Chain P2

60S ribosomal protein L23