IL_7LS1_163
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GC(UR3)CAGUAC*GGAACCGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_163 not in the Motif Atlas
- Geometric match to IL_3DIL_003
- Geometric discrepancy: 0.3358
- The information below is about IL_3DIL_003
- Detailed Annotation
- 9x8 Sarcin-Ricin with GA cWW pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34470.3
- Basepair signature
- cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7LS1|1|A2|G|4247
7LS1|1|A2|C|4248
7LS1|1|A2|UR3|4249
7LS1|1|A2|C|4250
7LS1|1|A2|A|4251
7LS1|1|A2|G|4252
7LS1|1|A2|U|4253
7LS1|1|A2|A|4254
7LS1|1|A2|C|4255
*
7LS1|1|A2|G|4260
7LS1|1|A2|G|4261
7LS1|1|A2|A|4262
7LS1|1|A2|A|4263
7LS1|1|A2|C|4264
7LS1|1|A2|C|4265
7LS1|1|A2|G|4266
7LS1|1|A2|C|4267
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C1
- 60S ribosomal protein L9
- Chain E2
- 60S ribosomal protein L3
- Chain P2
- 60S ribosomal protein L23
- Chain g2
- Ubiquitin-60S ribosomal protein L40
- Chain m
- Elongation factor 2
Coloring options: