IL_7LS1_168

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

7LS1|1|A2|A|4308, 7LS1|1|A2|U|4309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_168 not in the Motif Atlas

Geometric match to IL_4WF9_103

Geometric discrepancy: 0.1628

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.4

Basepair signature

cWW-cWW

Number of instances in this motif group

22

Unit IDs

7LS1|1|A2|U|4293
7LS1|1|A2|U|4294
*
7LS1|1|A2|A|4307
7LS1|1|A2|A|4308
7LS1|1|A2|U|4309
7LS1|1|A2|G|4310

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L2

60S ribosomal protein L19

Chain X2

60S ribosomal protein L31