IL_7LS1_169

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

7LS1|1|A2|A|4360

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_169 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2385

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7LS1|1|A2|G|4332
7LS1|1|A2|A|4333
7LS1|1|A2|U|4334
7LS1|1|A2|U|4335
7LS1|1|A2|A|4336
7LS1|1|A2|U|4337
*
7LS1|1|A2|A|4357
7LS1|1|A2|G|4358
7LS1|1|A2|A|4359
7LS1|1|A2|A|4360
7LS1|1|A2|U|4361
7LS1|1|A2|C|4362

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C1

60S ribosomal protein L9

Chain I2

60S ribosomal protein L13a

Chain g2

Ubiquitin-60S ribosomal protein L40