IL_7LS1_175

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUC*GU

Length

5 nucleotides

Bulged bases

7LS1|1|A2|U|4424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_175 not in the Motif Atlas

Geometric match to IL_2A64_003

Geometric discrepancy: 0.2452

The information below is about IL_2A64_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

7LS1|1|A2|G|4422
7LS1|1|A2|U|4424
7LS1|1|A2|C|4425
*
7LS1|1|A2|G|4508
7LS1|1|A2|U|4509

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C1

60S ribosomal protein L9

Chain I2

60S ribosomal protein L13a