IL_7LS1_199

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGCA*UAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_199 not in the Motif Atlas

Geometric match to IL_1JID_002

Geometric discrepancy: 0.2388

The information below is about IL_1JID_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

7LS1|1|m2|A|22
7LS1|1|m2|G|23
7LS1|1|m2|C|24
7LS1|1|m2|A|25
*
7LS1|1|m2|U|651
7LS1|1|m2|A|652
7LS1|1|m2|U|653
7LS1|1|m2|U|654

Current chains

Chain m2

28S rRNA

Nearby chains

Chain E3

40S ribosomal protein S23

Chain L3

40S ribosomal protein S9