IL_7LS1_201

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAA*UGA(OMC)G

Length

9 nucleotides

Bulged bases

7LS1|1|m2|A|518

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_201 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.3629

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7LS1|1|m2|C|37
7LS1|1|m2|A|38
7LS1|1|m2|A|39
7LS1|1|m2|A|40
*
7LS1|1|m2|U|516
7LS1|1|m2|G|517
7LS1|1|m2|A|518
7LS1|1|m2|OMC|519
7LS1|1|m2|G|520

Current chains

Chain m2

28S rRNA

Nearby chains

Chain L3

40S ribosomal protein S9

Chain r2

40S ribosomal protein S4, X isoform