IL_7LS1_202

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

7LS1|1|m2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_202 not in the Motif Atlas

Homologous match to IL_4V88_387

Geometric discrepancy: 0.3201

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7LS1|1|m2|G|41
7LS1|1|m2|A|42
7LS1|1|m2|U|43
7LS1|1|m2|U|44
7LS1|1|m2|A|45
7LS1|1|m2|A|46
7LS1|1|m2|G|47
*
7LS1|1|m2|C|481
7LS1|1|m2|G|482
7LS1|1|m2|C|483

Current chains

Chain m2

28S rRNA

Nearby chains

Chain E3

40S ribosomal protein S23

Chain m

Elongation factor 2