IL_7LS1_217

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGA*UACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_217 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3406

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7LS1|1|m2|G|438
7LS1|1|m2|G|439
7LS1|1|m2|G|440
7LS1|1|m2|A|441
*
7LS1|1|m2|U|456
7LS1|1|m2|A|457
7LS1|1|m2|C|458
7LS1|1|m2|C|459

Current chains

Chain m2

28S rRNA

Nearby chains

Chain K3

40S ribosomal protein S6

Chain P2

60S ribosomal protein L23

Chain u

40S ribosomal protein S8