IL_7LS1_219

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

7LS1|1|m2|U|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_219 not in the Motif Atlas

Geometric match to IL_6CZR_126

Geometric discrepancy: 0.2945

The information below is about IL_6CZR_126

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7LS1|1|m2|U|489
7LS1|1|m2|U|490
7LS1|1|m2|A|491
*
7LS1|1|m2|U|513
7LS1|1|m2|A|514

Current chains

Chain m2

28S rRNA

Nearby chains

Chain L3

40S ribosomal protein S9

Chain Q3

40S ribosomal protein S24

Chain m

Elongation factor 2