IL_7LS1_222

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUA*UAAU

Length

7 nucleotides

Bulged bases

7LS1|1|m2|A|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_222 not in the Motif Atlas

Geometric match to IL_1NBS_006

Geometric discrepancy: 0.2953

The information below is about IL_1NBS_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

7LS1|1|m2|A|531
7LS1|1|m2|U|532
7LS1|1|m2|A|533
*
7LS1|1|m2|U|555
7LS1|1|m2|A|556
7LS1|1|m2|A|557
7LS1|1|m2|U|558

Current chains

Chain m2

28S rRNA

Nearby chains

Chain L3

40S ribosomal protein S9

Chain T3

40S ribosomal protein S30