IL_7LS1_229

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_229 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1569

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_09092.1

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7LS1|1|m2|G|667
7LS1|1|m2|U|668
7LS1|1|m2|U|669
7LS1|1|m2|A2M|670
7LS1|1|m2|A|671
7LS1|1|m2|A|672
7LS1|1|m2|A|673
*
7LS1|1|m2|U|1163
7LS1|1|m2|C|1164

Current chains

Chain m2

28S rRNA

Nearby chains

Chain E3

40S ribosomal protein S23

Chain F3

40S ribosomal protein S26