IL_7LS1_247
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_247 not in the Motif Atlas
- Geometric match to IL_4V88_438
- Geometric discrepancy: 0.2067
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7LS1|1|m2|C|1100
7LS1|1|m2|G|1101
7LS1|1|m2|A|1102
7LS1|1|m2|U|1103
*
7LS1|1|m2|G|1133
7LS1|1|m2|C|1134
7LS1|1|m2|A|1135
7LS1|1|m2|G|1136
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain F3
- 40S ribosomal protein S26
- Chain N3
- 40S ribosomal protein S13
- Chain o2
- 40S ribosomal protein SA
- Chain p2
- 40S ribosomal protein S3a
- Chain z2
- 40S ribosomal protein S17
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