IL_7LS1_257
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 7LS1|1|m2|G|1287
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_257 not in the Motif Atlas
- Homologous match to IL_4V88_447
- Geometric discrepancy: 0.555
- The information below is about IL_4V88_447
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_34780.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7LS1|1|m2|G|1283
7LS1|1|m2|A|1284
7LS1|1|m2|C|1285
7LS1|1|m2|A|1286
7LS1|1|m2|G|1287
7LS1|1|m2|G|1288
7LS1|1|m2|A|1289
7LS1|1|m2|U|1290
7LS1|1|m2|U|1291
7LS1|1|m2|G|1292
*
7LS1|1|m2|C|1311
7LS1|1|m2|U|1312
7LS1|1|m2|C|1313
7LS1|1|m2|G|1314
7LS1|1|m2|A|1315
7LS1|1|m2|U|1316
7LS1|1|m2|U|1317
7LS1|1|m2|C|1318
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain H3
- 40S ribosomal protein S29
- Chain M3
- 40S ribosomal protein S12
- Chain U3
- Ubiquitin-40S ribosomal protein S27a
- Chain v2
- 40S ribosomal protein S10
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