IL_7LS1_258

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_258 not in the Motif Atlas

Homologous match to IL_4V88_448

Geometric discrepancy: 0.3943

The information below is about IL_4V88_448

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

7LS1|1|m2|A|1293
7LS1|1|m2|C|1294
7LS1|1|m2|A|1295
*
7LS1|1|m2|U|1308
7LS1|1|m2|U|1309
7LS1|1|m2|U|1310

Current chains

Chain m2

28S rRNA

Nearby chains

Chain H3

40S ribosomal protein S29

Chain U3

Ubiquitin-40S ribosomal protein S27a