IL_7LS1_263

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_263 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.1577

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

7LS1|1|m2|U|1349
7LS1|1|m2|G|1350
7LS1|1|m2|G|1351
*
7LS1|1|m2|C|1382
7LS1|1|m2|G|1383
7LS1|1|m2|A|1384

Current chains

Chain m2

28S rRNA

Nearby chains

Chain J3

40S ribosomal protein S2

Chain o2

40S ribosomal protein SA

Chain q2

40S ribosomal protein S3

Chain z2

40S ribosomal protein S17