IL_7LS1_268

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

7LS1|1|m2|C|1436, 7LS1|1|m2|C|1439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_268 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2118

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_09092.1

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7LS1|1|m2|U|1410
7LS1|1|m2|A|1411
*
7LS1|1|m2|U|1434
7LS1|1|m2|C|1435
7LS1|1|m2|C|1436
7LS1|1|m2|C|1437
7LS1|1|m2|C|1438
7LS1|1|m2|C|1439
7LS1|1|m2|A|1440

Current chains

Chain m2

28S rRNA

Nearby chains

Chain C3

40S ribosomal protein S20

Chain y2

40S ribosomal protein S16