IL_7LS1_272
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 7LS1|1|m2|A|1582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS1_272 not in the Motif Atlas
- Geometric match to IL_4LFB_052
- Geometric discrepancy: 0.2668
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7LS1|1|m2|G|1552
7LS1|1|m2|U|1553
7LS1|1|m2|G|1554
7LS1|1|m2|C|1555
7LS1|1|m2|C|1556
7LS1|1|m2|U|1557
7LS1|1|m2|A|1558
7LS1|1|m2|C|1559
7LS1|1|m2|C|1560
*
7LS1|1|m2|G|1579
7LS1|1|m2|U|1580
7LS1|1|m2|A|1581
7LS1|1|m2|A|1582
7LS1|1|m2|C|1583
7LS1|1|m2|C|1584
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain C3
- 40S ribosomal protein S20
- Chain H3
- 40S ribosomal protein S29
- Chain q2
- 40S ribosomal protein S3
- Chain v2
- 40S ribosomal protein S10
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