IL_7LS1_274

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_274 not in the Motif Atlas

Geometric match to IL_5J7L_059

Geometric discrepancy: 0.3192

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7LS1|1|m2|G|1704
7LS1|1|m2|C|1705
7LS1|1|m2|C|1706
7LS1|1|m2|C|1707
*
7LS1|1|m2|G|1831
7LS1|1|m2|UR3|1832
7LS1|1|m2|A|1833
7LS1|1|m2|A|1834
7LS1|1|m2|C|1835

Current chains

Chain m2

28S rRNA

Nearby chains

Chain A

Isoform 3 of Plasminogen activator inhibitor 1 RNA-binding protein

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain h2

60S ribosomal protein L41