IL_7LS1_279

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

7LS1|1|m2|U|1723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_279 not in the Motif Atlas

Homologous match to IL_4V88_469

Geometric discrepancy: 0.1783

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7LS1|1|m2|U|1722
7LS1|1|m2|U|1723
7LS1|1|m2|G|1724
*
7LS1|1|m2|U|1814
7LS1|1|m2|A|1815

Current chains

Chain m2

28S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain E3

40S ribosomal protein S23

Chain P2

60S ribosomal protein L23

Chain h2

60S ribosomal protein L41