IL_7LS1_301

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

7LS1|1|A2|A2M|3441, 7LS1|1|A2|C|3447, 7LS1|1|A2|C|3466

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_301 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1565

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7LS1|1|A2|C|3437
7LS1|1|A2|5MC|3438
7LS1|1|A2|A|3439
7LS1|1|A2|A|3440
7LS1|1|A2|A2M|3441
7LS1|1|A2|U|3442
7LS1|1|A2|G|3443
7LS1|1|A2|C|3444
7LS1|1|A2|C|3445
7LS1|1|A2|U|3446
7LS1|1|A2|C|3447
7LS1|1|A2|OMG|3448
*
7LS1|1|A2|C|3464
7LS1|1|A2|G|3465
7LS1|1|A2|C|3466
7LS1|1|A2|G|3467

Current chains

Chain A2

28S rRNA

Nearby chains

Chain h2

60S ribosomal protein L41

Chain m2

Small subunit ribosomal RNA; SSU rRNA