IL_7LS1_317

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS1_317 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.3324

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.5

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7LS1|1|m2|C|929
7LS1|1|m2|G|930
7LS1|1|m2|G|931
7LS1|1|m2|C|932
7LS1|1|m2|C|933
*
7LS1|1|m2|G|1012
7LS1|1|m2|A|1013
7LS1|1|m2|A|1014
7LS1|1|m2|U|1015
7LS1|1|m2|G|1016

Current chains

Chain m2

28S rRNA

Nearby chains

Chain N3

40S ribosomal protein S13

Chain S3

40S ribosomal protein S27-like

Chain p2

40S ribosomal protein S3a