IL_7LS2_018
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 7LS2|1|A2|G|409, 7LS2|1|A2|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS2_018 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.1326
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
7LS2|1|A2|G|387
7LS2|1|A2|A|388
7LS2|1|A2|A|389
7LS2|1|A2|C|390
*
7LS2|1|A2|G|401
7LS2|1|A2|A|402
7LS2|1|A2|G|403
7LS2|1|A2|U|404
7LS2|1|A2|U|405
7LS2|1|A2|C|406
7LS2|1|A2|A|407
7LS2|1|A2|A|408
7LS2|1|A2|G|409
7LS2|1|A2|A|410
7LS2|1|A2|G|411
7LS2|1|A2|G|412
7LS2|1|A2|G|413
7LS2|1|A2|C|414
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain J2
- 60S ribosomal protein L17
- Chain S2
- 60S ribosomal protein L26
- Chain f2
- 60S ribosomal protein L39
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