IL_7LS2_019
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAAC*G(OMU)GGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS2_019 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.3341
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7LS2|1|A2|G|415
7LS2|1|A2|U|416
7LS2|1|A2|G|417
7LS2|1|A2|A|418
7LS2|1|A2|A|419
7LS2|1|A2|A|420
7LS2|1|A2|C|421
*
7LS2|1|C2|G|13
7LS2|1|C2|OMU|14
7LS2|1|C2|G|15
7LS2|1|C2|G|16
7LS2|1|C2|A|17
7LS2|1|C2|U|18
7LS2|1|C2|C|19
Current chains
- Chain A2
- 28S rRNA
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain F2
- 60S ribosomal protein L4
- Chain J2
- 60S ribosomal protein L17
- Chain Y2
- 60S ribosomal protein L32
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