IL_7LS2_023

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGG*CAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_023 not in the Motif Atlas

Geometric match to IL_4V87_185

Geometric discrepancy: 0.3485

The information below is about IL_4V87_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

7LS2|1|A2|G|462
7LS2|1|A2|A|463
7LS2|1|A2|G|464
7LS2|1|A2|G|465
*
7LS2|1|A2|C|698
7LS2|1|A2|A|699
7LS2|1|A2|C|700

Current chains

Chain A2

28S rRNA

Nearby chains

Chain H2

60S ribosomal protein L6

Chain k2

60S ribosomal protein L28