IL_7LS2_031

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_031 not in the Motif Atlas

Geometric match to IL_4V9F_021

Geometric discrepancy: 0.2363

The information below is about IL_4V9F_021

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

7LS2|1|A2|U|513
7LS2|1|A2|U|514
7LS2|1|A2|U|515
7LS2|1|A2|C|516
*
7LS2|1|A2|G|654
7LS2|1|A2|G|655

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F1

60S ribosomal protein L13