IL_7LS2_049

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GUCG

Length

6 nucleotides

Bulged bases

7LS2|1|A2|U|1031, 7LS2|1|A2|C|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_049 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2757

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7LS2|1|A2|C|951
7LS2|1|A2|C|952
*
7LS2|1|A2|G|1030
7LS2|1|A2|U|1031
7LS2|1|A2|C|1032
7LS2|1|A2|G|1033

Current chains

Chain A2

28S rRNA

Nearby chains

Chain M2

60S ribosomal protein L18a

Chain N2

60S ribosomal protein L21