IL_7LS2_055

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

7LS2|1|A2|A|1310

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_055 not in the Motif Atlas

Homologous match to IL_5TBW_024

Geometric discrepancy: 0.0994

The information below is about IL_5TBW_024

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7LS2|1|A2|C|1280
7LS2|1|A2|C|1281
*
7LS2|1|A2|G|1309
7LS2|1|A2|A|1310
7LS2|1|A2|G|1311

Current chains

Chain A2

28S rRNA

Nearby chains

Chain K2

60S ribosomal protein L18

Chain U2

60S ribosomal protein L27a

Chain V2

60S ribosomal protein L29