IL_7LS2_073

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_073 not in the Motif Atlas

Geometric match to IL_7RQB_030

Geometric discrepancy: 0.3441

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7LS2|1|A2|G|1563
7LS2|1|A2|C|1564
7LS2|1|A2|C|1565
*
7LS2|1|A2|G|1571
7LS2|1|A2|A|1572
7LS2|1|A2|U|1573

Current chains

Chain A2

28S rRNA

Nearby chains

Chain x2

40S ribosomal protein S15