IL_7LS2_074

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

7LS2|1|A2|G|1617

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_074 not in the Motif Atlas

Homologous match to IL_8C3A_048

Geometric discrepancy: 0.2217

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7LS2|1|A2|C|1616
7LS2|1|A2|G|1617
7LS2|1|A2|C|1618
*
7LS2|1|A2|G|1625
7LS2|1|A2|G|1626

Current chains

Chain A2

28S rRNA

Nearby chains

Chain G2

60S ribosomal protein L5

Chain N2

60S ribosomal protein L21

Chain V2

60S ribosomal protein L29