IL_7LS2_087

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

7LS2|1|A2|C|1886

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_087 not in the Motif Atlas

Geometric match to IL_3DIL_001

Geometric discrepancy: 0.3768

The information below is about IL_3DIL_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

7LS2|1|A2|C|1885
7LS2|1|A2|C|1886
7LS2|1|A2|G|1887
*
7LS2|1|A2|C|2027
7LS2|1|A2|G|2028

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

60S ribosomal protein L7

Chain F2

60S ribosomal protein L4

Chain K2

60S ribosomal protein L18

Chain Y2

60S ribosomal protein L32