IL_7LS2_090
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- G(E7G)UG*CGCC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7LS2_090 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2312
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
7LS2|1|A2|G|2051
7LS2|1|A2|E7G|2052
7LS2|1|A2|U|2053
7LS2|1|A2|G|2054
*
7LS2|1|A2|C|2090
7LS2|1|A2|G|2091
7LS2|1|A2|C|2092
7LS2|1|A2|C|2093
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F2
- 60S ribosomal protein L4
- Chain Y2
- 60S ribosomal protein L32
- Chain k2
- 60S ribosomal protein L28
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