IL_7LS2_094

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAAC*GAAC

Length

10 nucleotides

Bulged bases

7LS2|1|A2|A|2183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_094 not in the Motif Atlas

Homologous match to IL_8C3A_066

Geometric discrepancy: 0.4149

The information below is about IL_8C3A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93630.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

7LS2|1|A2|G|2169
7LS2|1|A2|U|2170
7LS2|1|A2|G|2171
7LS2|1|A2|A|2172
7LS2|1|A2|A|2173
7LS2|1|A2|C|2174
*
7LS2|1|A2|G|2182
7LS2|1|A2|A|2183
7LS2|1|A2|A|2184
7LS2|1|A2|C|2185

Current chains

Chain A2

28S rRNA

Nearby chains

Chain J2

60S ribosomal protein L17

Chain L2

60S ribosomal protein L19

Chain f2

60S ribosomal protein L39