IL_7LS2_112

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7LS2|1|A2|U|2635

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_112 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1071

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.3

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7LS2|1|A2|C|2622
7LS2|1|A2|G|2623
7LS2|1|A2|U|2624
7LS2|1|A2|A|2625
7LS2|1|A2|A|2626
7LS2|1|A2|C|2627
*
7LS2|1|A2|G|2632
7LS2|1|A2|G|2633
7LS2|1|A2|A|2634
7LS2|1|A2|U|2635
7LS2|1|A2|A|2636
7LS2|1|A2|A|2637
7LS2|1|A2|G|2638

Current chains

Chain A2

28S rRNA

Nearby chains

Chain h2

60S ribosomal protein L41

Chain j2

60S ribosomal protein L37a

Chain m2

Small subunit ribosomal RNA; SSU rRNA