IL_7LS2_162

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

7LS2|1|A2|A|4308, 7LS2|1|A2|U|4309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7LS2_162 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2497

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7LS2|1|A2|U|4293
7LS2|1|A2|U|4294
*
7LS2|1|A2|A|4307
7LS2|1|A2|A|4308
7LS2|1|A2|U|4309
7LS2|1|A2|G|4310

Current chains

Chain A2

28S rRNA

Nearby chains

Chain L2

60S ribosomal protein L19

Chain X2

60S ribosomal protein L31