IL_7LS2_168

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCCGGAUAG*U(OMG)C(2MG)GAGAG

Length

19 nucleotides

Bulged bases

7LS2|1|A2|C|4409, 7LS2|1|A2|C|4410, 7LS2|1|A2|A|4416, 7LS2|1|A2|C|4516, 7LS2|1|A2|G|4518, 7LS2|1|A2|A|4519, 7LS2|1|A2|A|4521

QA status

Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS2|1|A2|C|4408
7LS2|1|A2|C|4409
7LS2|1|A2|C|4410
7LS2|1|A2|C|4411
7LS2|1|A2|G|4412
7LS2|1|A2|G|4413
7LS2|1|A2|A|4414
7LS2|1|A2|U|4415
7LS2|1|A2|A|4416
7LS2|1|A2|G|4417
*
7LS2|1|A2|U|4514
7LS2|1|A2|OMG|4515
7LS2|1|A2|C|4516
7LS2|1|A2|2MG|4517
7LS2|1|A2|G|4518
7LS2|1|A2|A|4519
7LS2|1|A2|G|4520
7LS2|1|A2|A|4521
7LS2|1|A2|G|4522

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C1

60S ribosomal protein L9

Chain G1

60S ribosomal protein L14

Chain H2

60S ribosomal protein L6

Chain I2

60S ribosomal protein L13a

Chain M2

60S ribosomal protein L18a